Previous Article | Next Article 
Journal of Clinical Microbiology, March 1998, p. 814-817, Vol. 36, No. 3
0095-1137/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
PCR Methods for Rapid Identification and
Characterization of Actinobacillus seminis Strains
S.
Appuhamy,1
J. G.
Coote,1
J. C.
Low,2 and
R.
Parton1,*
Division of Infection and Immunity,
University of Glasgow, Glasgow, G12 8QQ,1 and
Scottish Agricultural College Veterinary Services, Bush Estate,
Penicuik EH26 0QE,2 Scotland, United Kingdom
Received 15 May 1997/Returned for modification 23 September
1997/Accepted 18 November 1997
 |
ABSTRACT |
Twenty-four isolates of Actinobacillus seminis were
typed by PCR ribotyping, repetitive extragenic palindromic element
(REP)-based PCR, and enterobacterial repetitive intergenic consensus
(ERIC)-based PCR. Five types were distinguished by REP-PCR, and nine
types were distinguished by ERIC-PCR. PCR ribotyping produced the
simplest pattern and could be useful for identification of A. seminis and for its differentiation from related species. REP-
and ERIC-PCR could be used for strain differentiation in
epidemiological studies of A. seminis.
 |
TEXT |
Actinobacillus seminis is
a common cause of ovine epididymitis and ram infertility throughout the
world (2, 6, 10, 21). It was first isolated in the United
Kingdom in 1991 (7) and in one survey was found to be
present in the semen of 19% of infertile rams (11).
Clinical infections are usually unresponsive to treatment, and because
infected animals are of considerable financial value, economic losses
can be considerable. A. seminis is a fastidious,
slow-growing, pleomorphic, weakly fermentative bacterium. Primary
isolation and presumptive identification take several days; there are
relatively few distinguishing tests for this and phenotypically similar
organisms such as Histophilus ovis, which is also associated
with epididymitis; and there have been cases of misidentification
(20). It has been proposed that gram-negative pleomorphic
bacteria which are catalase, oxidase, nitrate, and ornithine
decarboxylase positive and indole, urease, phosphatase, and
-galactosidase negative should be considered A. seminis
(6), and the API-ZYM system has been shown to be useful for
provisional identification (4). However, because identification is laborious and because there is no published phenotypic or genotypic method for intraspecies discrimination of
A. seminis isolates, knowledge of the mechanisms of
transmission and persistence in rams and ewes and of the pathogenic
potential of different isolates is uncertain. In a previous study, a
combination of PCR ribotyping, repetitive extragenic palindromic
element (REP)-based PCR, and enterobacterial repetitive intergenic
consensus (ERIC)-based PCR techniques was used for identification and
fingerprinting of Haemophilus somnus isolates of ovine and
bovine origin (1). These methods were also found to be
applicable to the characterization of A. seminis strains.
Bacterial isolates.
Twenty-four A. seminis isolates
were included in this study (Table 1).
The type strain of A. seminis, NCTC 10851, was obtained from
the National Collection of Type Cultures, Colindale, United Kingdom.
All other field strains were isolated in Scottish Agricultural College
Veterinary Services Laboratories, except for SA32 and SA33, which were
kindly provided by P. J. Heath (7), and strain X16,
which was isolated by one of the authors (S. Appuhamy) from the
reproductive tract of a cow from slaughterhouse materials. H. ovis strains were isolated by Scottish Agricultural College Veterinary Services. All isolates were stored at
80°C in brain heart infusion broth (Oxoid) supplemented with 10% glycerol, 1% Tris
(BDH), 1% soluble starch (BDH), 0.5% sodium-L-aspartate
(Sigma) and 0.001% thiamine monophosphate (Sigma), pH 7.8 (1). They were propagated on brain heart infusion agar
(Oxoid) containing 5% sheep blood and 0.5% yeast extract (Oxoid), and
plates were incubated at 37°C for 48 h in a candle jar. The
identity of A. seminis isolates was confirmed by a panel of
cultural and biochemical tests (17) and by the API-ZYM
system (BioMerieux, Marcy l'Etoile, France) (4, 11). All
A. seminis isolates showed strong positive reactions in
tests for leucine arylamidase, acid phosphatase, and
-glucuronidase.
Variable intensities for the reaction of alkaline phosphatase were
observed, and the bovine isolate X16 was negative for this reaction.
Only one isolate (SA35) showed a weak positive reaction for lipase
esterase. All other tests were negative.
PCR amplification.
Bacteria were suspended in 1-ml volumes of
sterile distilled water to a turbidity equivalent to McFarland no. 5 standard (BioMerieux), heated to 100°C for 20 min, and centrifuged at
15,000 × g for 10 min; the supernatant was used as the
source of template DNA for PCR. The primers were GIRRN
(GAAGTCGTAACAAGG) and LIRRN (CAAGGCATCCACCGT) for
PCR ribotyping (8), REP-IRDT
(IIINCGNCGNCATCNGGC) and REP2-DT (NCGNCTTATCNGGCCTAC) for REP-PCR (18), and
ERIC-IR (ATGTAAGCTCCTGGGGATTCAC) and ERIC-2
(AAGTAAGTGACTGGGGTGAGCG) for ERIC-PCR (18). They were obtained from Life Technologies Ltd. (Paisley, United Kingdom). PCR methods were optimized for template, deoxynucleoside
triphosphate, primer, and magnesium ion concentrations by a
modified Taguchi method based on the use of orthogonal arrays as
described by Cobb and Clarkson (3). Annealing temperature
and extension time were also optimized. High intensity, resolution, and
sharpness of bands with a low background in an agarose gel were used as the criteria for optimization. The optimized reaction mixture (25 µl)
contained 10 mM Tris-HCl (pH 8.4), 50 mM KCl, 3 mM MgCl2, 0.2 mM each deoxynucleoside triphosphate (Boehringer Mannheim, Lewes,
United Kingdom), 100 pM each primer, 0.625 U of Taq DNA polymerase (Life Technologies Ltd.), and 2.5 µl of template DNA preparation. Twenty-five microliters of liquid paraffin was used to
overlay each reaction mixture. Amplification was performed in a
thermocycler (Techne Ltd., Cambridge, United Kingdom) for 35 cycles,
consisting of denaturation at 94°C for 30 s, annealing at 55°C
for 30 s, and extension at 72°C for 6 min, with a final extension at 72°C for 6 min. The amplified products were
electrophoresed in 2.0% agarose type II-A (Sigma) in Tris-borate-EDTA
buffer containing 0.5 µg of ethidium bromide/ml (15) in a
horizontal submarine electrophoresis apparatus (E-C Apparatus
Corporation, St. Petersburg, Fla.). The amplimers were visualized and
photographed under UV light. Whenever a distinct PCR profile, in terms
of the number and positions of the clearly visible bands, was observed,
the corresponding strain was given a unique number or letter
designation.
Typing of strains.
REP-PCR, ERIC-PCR, and PCR ribotyping have
been used to identify species and also to differentiate strains within
species of both gram-positive and gram-negative bacteria (1, 8, 9,
18). Boiled cell extracts as the source of template DNA produced
the same results as extracted chromosomal DNA for all three PCR methods
(1, 9). PCR-based fingerprinting is therefore simple and
rapid and can be performed with very small quantities of bacterial
cultures. Reproducibility was good for all three methods not only with
the same template, but also with template samples derived from
different cultures, although some day-to-day variation in the intensity
of amplimers, particularly of the minor bands, was observed.
With the REP-PCR method, profiles of A. seminis revealed
amplified bands ranging from <0.25 to 2.5 kb with various intensities (Fig. 1). This method produced complex
banding patterns, but the 24 isolates were grouped into five distinct
patterns of fingerprints, each of which was assigned a number (Table
1). Group 1 included the type strain and seven other isolates with
similar patterns, and this was the largest group. Group 2 had two
isolates, group 3 had six isolates, and group 4 had seven isolates. The
bovine strain (X16) had a unique pattern. There were major REP markers of 275, 550, 600, 800, 1,050, and 1,100 bp common to all A. seminis isolates.

View larger version (146K):
[in this window]
[in a new window]
|
FIG. 1.
Fingerprints obtained by REP-PCR for A. seminis isolates. Lanes M, 1-kb DNA ladder; lanes 1 to 24, A. seminis isolates NCTC 10851 (type strain), SA25, SA31,
SA32, SA36, SA39, SA67, SA71, SA65, SA66, SA33, SA37, SA43, SA60, SA63,
SA70, SA30, SA34, SA35, SA38, SA61, SA62, SA64, and X16, respectively.
The profiles have been arranged so that isolates of a similar type are
grouped together: type 1 in lanes 1 to 8, type 2 in lanes 9 to 10, type
3 in lanes 11 to 16, type 4 in lanes 17 to 23, and type 5 in lane 24 (see Table 1).
|
|
ERIC-PCR produced nine distinguishable patterns for the 24 isolates
and, therefore, the highest degree of discrimination among isolates
(Table 1). The fragments ranged from <0.1 to 1.65 kb, with various
band intensities (Fig. 2). The
distribution of isolates was as follows: group B, five isolates,
including the type strain; group C, four isolates; and group E, nine
isolates. Groups A, D, F, G, H, and I contained one isolate each.
ERIC-PCR fingerprints of all isolates showed common markers, with the
bands at 330, 515, and 600 bp being the most intense. However, the
bovine isolate, X16, was clearly distinguishable from all the other
strains.

View larger version (141K):
[in this window]
[in a new window]
|
FIG. 2.
Fingerprints obtained by ERIC-PCR for A. seminis isolates. Lanes M, 1-kb DNA ladder; lanes 1 to 24, A. seminis isolates SA39, NCTC 10851 (type strain), SA37,
SA60, SA65, SA66, SA31, SA36, SA67, SA71, SA70, SA30, SA33, SA34, SA35,
SA38, SA43, SA61, SA62, SA64, SA25, SA32, SA63, and X16, respectively.
The profiles have been arranged so that isolates of a similar type are
grouped together: type A in lane 1, type B in lanes 2 to 6, type C in
lanes 7 to 10, type D in lane 11, type E in lanes 12 to 20, type F in
lane 21, type G in lane 22, type H in lane 23, and type I in lane 24 (see Table 1).
|
|
PCR ribotyping of the 24 isolates gave very similar fingerprints for
all isolates except SA33. The profiles were characterized by two
high-intensity bands of 0.55 and 0.7 kb and a less-intense band of 0.85 kb (Fig. 3). Isolate SA33 showed an
additional intense band of 0.9 kb, and for this reason, this isolate
was considered to be a separate type by PCR ribotyping (Table 1). The
isolate of bovine origin (X16) showed the same band pattern as the
ovine isolates.

View larger version (134K):
[in this window]
[in a new window]
|
FIG. 3.
Differentiation of A. seminis from H. ovis by PCR methods. Lanes M, 1-kb DNA ladder; lanes 1 to 4, different isolates of H. ovis; lanes 5 to 8, A. seminis strains SA32, SA33, SA37, and SA39, respectively.
|
|
The types generated by the PCR methods showed no correlation with the
breed of sheep or disease condition of the host (Table 1). However,
several of the isolates from southern Scotland obtained over a 3- to
4-year period possessed similar fingerprints, but the number of
isolates examined was not sufficient to draw clear conclusions.
However, one significant finding was that isolates taken from the same
animal at different times showed the same fingerprint by all three
methods (SA65 and SA66, SA30 and SA64, and SA34 and SA38; see Table 1).
The bovine strain (X16) was isolated from the vestibular opening of a
cow during a study of H. somnus isolates collected from slaughterhouse materials. This isolate was culturally indistinguishable from H. somnus but was catalase positive. There have been
previous reports of A. seminis being isolated from cattle,
but those isolates were catalase negative (5). Because
A. seminis is usually described as a catalase-positive
organism (6, 16), the identity of the previous isolates from
cattle is uncertain. Isolate X16 was confirmed as an A. seminis isolate by API-ZYM. Its REP and ERIC fingerprints showed
common markers with other A. seminis isolates, and it gave a
PCR ribotyping pattern characteristic of A. seminis. These
findings suggest that this isolate may well represent a subtype of
A. seminis of bovine origin.
Comparison with H. ovis.
H. ovis is an ovine
pathogen that can cause epididymitis and orchitis. It may well be
present in the same clinical specimens as A. seminis, and it
may be difficult to distinguish biochemically between the two species.
Stephens et al. (17) distinguished two isolates of A. seminis from the Haemophilus-Histophilus group by their
lack of yellow pigment, production of catalase, and differences in cell
wall envelope protein profiles. Recent genetic studies have shown a
clearer picture of species differentiation, for example, by restriction
endonuclease profiles for BamHI (12, 13) and DNA-DNA hybridization techniques (14, 19). In 1990, Sneath and Stevens (16) defined the properties of A. seminis and proposed it as a new species on the basis of cultural,
biochemical, and DNA-DNA hybridization methods. When a number of
representative H. ovis isolates were compared with A. seminis strains by the three PCR methods, the profiles were
completely different (Fig. 3). The profiles were also distinct from
those of H. somnus isolates examined previously
(1) (data not shown). Thus, the PCR methods can readily be
used to differentiate between A. seminis and the Haemophilus-Histophilus group.
In conclusion, PCR ribotyping, REP-PCR, and ERIC-PCR generated
reproducible and discriminatory fingerprints of A. seminis, and the genetic heterogeneity of this species was revealed. In a
previous report, A. seminis was found to be genetically
homogeneous by BamHI restriction endonuclease profiles
(12). Among our 24 isolates there were two ribotypes, five
REP types, and nine ERIC types (Table 1). PCR ribotyping produced a
simple pattern which could be used to identify A. seminis
and to differentiate it from other, related species. REP and ERIC-PCR
produced complex patterns but showed common markers for all isolates.
This indicates that these two methods could be used for strain
differentiation of A. seminis for epidemiological studies
and also for confirmation of the identity of A. seminis
isolates by the presence of these common markers. ERIC-PCR was more
discriminatory than REP-PCR.
 |
ACKNOWLEDGMENTS |
S.A. was supported by an Agricultural Research Scholarship from the
Government of Sri Lanka and a scholarship provided by the Institute of
Biomedical and Life Sciences, University of Glasgow.
The useful comments of D. J. Taylor, Department of Veterinary
Pathology, University of Glasgow, and the kind cooperation of M. J. A. Mylne, Veterinary Officer in Charge, Edinburgh Genetics, Bush Estate, Penicuik, Scotland, are gratefully acknowledged.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Division of
Infection and Immunity, University of Glasgow, Joseph Black Building,
Glasgow G12 8QQ, Scotland, United Kingdom. Phone: 0141 330 5844. Fax: 0141 330 4600. E-mail: rparton{at}bio.gla.ac.uk.
 |
REFERENCES |
| 1.
|
Appuhamy, S.,
R. Parton,
J. G. Coote, and H. A. Gibbs.
1997.
Genomic fingerprinting of Haemophilus somnus by a combination of PCR methods.
J. Clin. Microbiol.
35:288-291[Abstract].
|
| 2.
|
Baynes, I. D., and G. C. Simmons.
1960.
Ovine epididymitis caused by Actinobacillus seminis, N. sp.
Aust. Vet. J.
36:454-459.
|
| 3.
|
Cobb, B. D., and J. M. Clarkson.
1994.
A simple procedure for optimising the polymerase chain reaction (PCR) using modified Taguchi methods.
Nucleic Acids Res.
22:3801-3805[Abstract/Free Full Text].
|
| 4.
|
Cousins, D. V., and J. M. Lloyd.
1988.
Rapid identification of Hemophilus somnus, Histophilus ovis and Actinobacillus seminis using the API-ZYM system.
Vet. Microbiol.
17:75-81[Medline].
|
| 5.
|
Dixon, R. J.,
B. J. Stevenson, and K. R. Sims.
1983.
Actinobacillus seminis isolated from cattle.
N. Z. Vet. J.
31:122-123.
|
| 6.
|
Hajtos, I.,
L. Fodor,
R. Glavits, and J. Varga.
1987.
Isolation and characterization of Actinobacillus seminis strains from ovine semen samples and epididymitis.
J. Vet. Med. Ser. B
34:138-147.
|
| 7.
|
Heath, P. J.,
I. H. Davies,
J. H. Morgan, and I. A. Aitken.
1991.
Isolation of Actinobacillus seminis from rams in the United Kingdom.
Vet. Rec.
129:304-307[Abstract].
|
| 8.
|
Jensen, M. A.,
J. A. Webster, and N. Straus.
1993.
Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms.
Appl. Environ. Microbiol.
59:945-952[Abstract/Free Full Text].
|
| 9.
|
Kerr, K. G.
1994.
The rap on REP-PCR-based typing systems.
Rev. Med. Microbiol.
5:233-244.
|
| 10.
|
Livingston, C. W., and W. T. Hardy.
1964.
Isolation of Actinobacillus seminis from ovine epididymitis.
Am. J. Vet. Res.
25:660-663[Medline].
|
| 11.
|
Low, J. C.,
D. Somerville,
M. J. A. Mylne, and W. A. C. McKelvey.
1995.
Prevalence of Actinobacillus seminis in the semen of rams in the United Kingdom.
Vet. Rec.
136:268-269[Abstract].
|
| 12.
|
McGillivery, D. J., and J. J. Webber.
1989.
Genetic homogeneity of Actinobacillus seminis isolates.
Res. Vet. Sci.
46:424-425[Medline].
|
| 13.
|
McGillivery, D. J.,
J. J. Webber, and H. F. Dean.
1986.
Characterization of Histophilus ovis and related organisms by restriction endonuclease analysis.
Aust. Vet. J.
63:389-393[Medline].
|
| 14.
|
Piechulla, K.,
R. Mutters,
S. Burbach,
R. Klussmeier,
S. Pohl, and W. Mannheim.
1986.
Deoxyribonucleic acid relationships of "Histophilus ovis/Haemophilus somnus," Haemophilus haemoglobinophilus, and "Actinobacillus seminis."
Int. J. Syst. Bacteriol.
36:1-7.
|
| 15.
|
Sambrook, J.,
E. F. Fritsch, and T. Maniatis.
1989.
Molecular cloning: a laboratory manual, 2nd ed.
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
|
| 16.
|
Sneath, P. H. A., and M. Stevens.
1990.
Actinobacillus rossii sp. nov., Actinobacillus seminis sp. nov., nom. rev., Pasteurella bettii sp. nov., Pasteurella lymphangitidis sp. nov., Pasteurella mairi sp. nov., and Pasteurella trehalosi sp. nov.
Int. J. Syst. Bacteriol.
40:148-153[Abstract/Free Full Text].
|
| 17.
|
Stephens, L. R.,
J. D. Humphrey,
P. B. Little, and D. A. Barnum.
1983.
Morphological, biochemical, antigenic, and cytochemical relationships among Haemophilus somnus, Haemophilus agni, Haemophilus haemoglobinophilus, Histophilus ovis, and Actinobacillus seminis.
J. Clin. Microbiol.
17:728-737[Abstract/Free Full Text].
|
| 18.
|
Versalovic, J.,
T. Koeuth, and J. R. Lupski.
1991.
Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes.
Nucleic Acids Res.
19:6823-6831[Abstract/Free Full Text].
|
| 19.
|
Walker, R. L.,
E. L. Biberstein,
R. F. Pritchett, and C. Kirkham.
1985.
Deoxyribonucleic acid relatedness among Haemophilus somnus, Haemophilus agni, Histophilus ovis, Actinobacillus seminis, and Haemophilus influenzae.
Int. J. Syst. Bacteriol.
35:46-49[Abstract/Free Full Text].
|
| 20.
|
Walker, R. L.,
B. R. Leamaster,
J. N. Stellflug, and E. L. Biberstein.
1986.
Association of age of ram with distribution of epididymal lesions and etiologic agent.
J. Am. Vet. Med. Assoc.
188:393-396[Medline].
|
| 21.
|
Worthington, R. W., and P. P. Bosman.
1968.
Isolation of Actinobacillus seminis in South Africa.
J. S. Afr. Vet. Med. Assoc.
39:81-85.
|
Journal of Clinical Microbiology, March 1998, p. 814-817, Vol. 36, No. 3
0095-1137/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
This article has been cited by other articles:
-
Ventura, M., Meylan, V., Zink, R.
(2003). Identification and Tracing of Bifidobacterium Species by Use of Enterobacterial Repetitive Intergenic Consensus Sequences. Appl. Environ. Microbiol.
69: 4296-4301
[Abstract]
[Full Text]
-
Di Meo, C. A., Wilbur, A. E., Holben, W. E., Feldman, R. A., Vrijenhoek, R. C., Cary, S. C.
(2000). Genetic Variation among Endosymbionts of Widely Distributed Vestimentiferan Tubeworms. Appl. Environ. Microbiol.
66: 651-658
[Abstract]
[Full Text]