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Journal of Clinical Microbiology, August 1999, p. 2402-2407, Vol. 37, No. 8
0095-1137/99/$04.00+0

Cleavase Fragment Length Polymorphism Analysis of Neisseria meningitidis Basic Metabolic Genes

Maria Lucia C. Tondella,1,* Mike W. Reeves,1 Tanja Popovic,1 Nancy Rosenstein,1 Brian P. Holloway,2 and Leonard W. Mayer1

Meningitis and Special Pathogens Branch, Division of Bacterial and Mycotic Diseases,1 and Scientific Resources Program,2 National Center for Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia 30333

Received 16 February 1999/Returned for modification 30 March 1999/Accepted 20 April 1999

Cleavase fragment length polymorphism (CFLP) is a subtyping system based on the property of the enzyme cleavase to recognize junctions between single- and double-stranded regions of DNA formed after denaturation and cooling. To assess the capacity of CFLP for discriminating Neisseria meningitidis serogroup B strains belonging to the electrophoretic type (ET) 5 (ET-5) complex from other serogroup B strains, 30 serogroup B N. meningitidis isolates were subtyped by CFLP with internal fragments of five housekeeping genes, adk, aspC, carA, dhp, and glnA. Two genes (glnA and carA) which demonstrated a high degree of diversity for the serogroup B isolates were then used to further evaluate the suitability of CFLP for screening 50 serogroup C N. meningitidis outbreak-associated and sporadic-case isolates with a single metabolic gene. The results were compared to those from multilocus enzyme electrophoresis (MEE), the current standard subtyping method. CFLP was able to distinguish the ET-5 complex isolates from other serogroup B isolates as efficiently as MEE. Furthermore, CFLP analysis of a single gene was sufficient to identify and cluster the serogroup C isolates belonging to the ET-37 complex from other, unrelated serogroup C isolates but was not capable of differentiating between the isolates of the major individual ETs of this complex (ET-17 and ET-24) causing most serogroup C meningococcal disease outbreaks in the United States. CFLP based on a single gene with a high degree of diversity but not under selective pressure can be applied to the rapid screening of a large number of isolates related to the recognized epidemic complex ET-5 or ET-37. Additionally, CFLP can be used as an initial screening tool to survey the amount of diversity in genes that might be used to develop a DNA sequence-based subtyping system.


* Corresponding author. Mailing address: Meningitidis and Special Pathogens Branch, Division of Bacterial and Mycotic Diseases, National Center for Infectious Diseases, Centers for Disease Control and Prevention, MS C-02, Atlanta, GA 30333. Phone: (404) 639-4057. Fax: (404) 639-3123. E-mail: mlt5{at}cdc.gov.


Journal of Clinical Microbiology, August 1999, p. 2402-2407, Vol. 37, No. 8
0095-1137/99/$04.00+0



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